# CLIPSeqTools ## Summary CLIPSeqTools is a collection of scripts that can be used for the analysis of CLIP-Seq data. The toolbox is primarily oriented for bioinfromaticians but we try to make it a simple as possible so that even biologists with a little bit of command line background could run most of the analysis. ## Installation * **Using CPAN** - Not yet supported 1. If you have cpanm installed. `cpanm CLIPSeqTools`. 2. If you do not have cpanm. See [here](http://www.cpan.org/modules/INSTALL.html). * **Using Git** - Preferred so you may contribute 1. Install git ([directions](http://git-scm.com/downloads)). 2. Install dependencies (listed below) from CPAN. [How to install CPAN modules](http://www.cpan.org/modules/INSTALL.html). 3. Clone the repository on your machine `git clone https://github.com/palexiou/GenOO-CLIP.git`. ## Dependencies (maybe not exhaustive) * GenOO * Pod::Usage * Modern::Perl ## State The toolbox is under heavy development and functionality is added regularly. Consider it unstable. ## Copyright Copyright (c) 2014 Emmanouil "Manolis" Maragkakis and Panagiotis Alexiou. ## License This library is free software and may be distributed under the same terms as perl itself. This library is distributed in the hope that it will be useful, but **WITHOUT ANY WARRANTY**; without even the implied warranty of merchantability or fitness for a particular purpose.