Last updated on 2026-07-24 21:50:52 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.2.0 | 4.12 | 491.21 | 495.33 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.2.0 | 3.62 | 283.64 | 287.26 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 1.2.0 | 740.12 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 1.2.0 | 364.99 | ERROR | |||
| r-devel-windows-x86_64 | 1.2.0 | 7.00 | 491.00 | 498.00 | OK | |
| r-patched-linux-x86_64 | 1.2.0 | 4.60 | 462.73 | 467.33 | OK | |
| r-release-linux-x86_64 | 1.2.0 | 3.80 | 483.28 | 487.08 | OK | |
| r-release-macos-arm64 | 1.2.0 | 1.00 | 126.00 | 127.00 | OK | |
| r-release-macos-x86_64 | 1.2.0 | 3.00 | 651.00 | 654.00 | OK | |
| r-release-windows-x86_64 | 1.2.0 | 8.00 | 488.00 | 496.00 | OK | |
| r-oldrel-macos-arm64 | 1.2.0 | 1.00 | 134.00 | 135.00 | OK | |
| r-oldrel-macos-x86_64 | 1.2.0 | 3.00 | 669.00 | 672.00 | OK | |
| r-oldrel-windows-x86_64 | 1.2.0 | 10.00 | 681.00 | 691.00 | OK |
Version: 1.2.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [257s/305s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(amregtest)
Loading required package: allelematch
Loading required package: dynamicTreeCut
>
> test_check("amregtest")
Saving _problems/test-allelematch_3-amPairwise_negative-45.R
Cleaning up 1 leaked TEMP file(s):
/home/hornik/tmp/scratch/RtmpKdORyu/pdf2d95b41f2c10a3
Cleaning up 1 leaked TEMP file(s):
/home/hornik/tmp/scratch/RtmpKdORyu/pdf2d95b473574b67
Cleaning up 1 leaked TEMP file(s):
/home/hornik/tmp/scratch/RtmpKdORyu/pdf2d95b47a52ebd8
Cleaning up 1 leaked TEMP file(s):
/home/hornik/tmp/scratch/RtmpKdORyu/pdf2d95b41a2551e2
Cleaning up 1 leaked TEMP file(s):
/home/hornik/tmp/scratch/RtmpKdORyu/pdf2d95b4505a3352
[ FAIL 2 | WARN 0 | SKIP 24 | PASS 135 ]
══ Skipped tests (24) ══════════════════════════════════════════════════════════
• On CRAN (24): 'test-allelematch_1-amDataset.R:47:1',
'test-allelematch_1-amDataset.R:147:1', 'test-allelematch_2-amMatrix.R:2:1',
'test-allelematch_2-amMatrix.R:90:1',
'test-allelematch_2-amMatrix_negative.R:2:1',
'test-allelematch_3-amPairwise.R:7:1',
'test-allelematch_3-amPairwise.R:74:1',
'test-allelematch_3-amPairwise_print.R:2:1',
'test-allelematch_4-amCluster-Ex1.R:2:1',
'test-allelematch_4-amCluster-Ex2.R:2:1',
'test-allelematch_4-amCluster-Ex3.R:2:1',
'test-allelematch_4-amCluster-Ex4.R:2:1',
'test-allelematch_4-amCluster-Ex5.R:2:1',
'test-allelematch_4-amCluster-amMini.R:2:1',
'test-allelematch_4-amCluster_print.R:2:1',
'test-allelematch_5-amAlleleFreq.R:2:1', 'test-allelematch_6-amUnique.R:2:1',
'test-allelematch_6-amUnique_print.R:2:1',
'test-allelematch_7-amUniqueProfile.R:2:1', 'test-amExample1.R:10:1',
'test-amExample2.R:10:1', 'test-amExample3.R:11:1', 'test-amExample4.R:15:1',
'test-ggData.R:11:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-allelematch_3-amPairwise_negative.R:45:5'): Validation of arguments to amPairwise() is working ──
Error: allelematch: please specify alleleMismatch OR matchThreshold
Backtrace:
▆
1. ├─testthat::expect_error(amPairwise(amdataOdd2), "allelematch:\\s+please specify alleleMismatch OR matchThreshold.") at test-allelematch_3-amPairwise_negative.R:45:5
2. │ └─testthat:::expect_condition_matching_(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. └─allelematch::amPairwise(amdataOdd2)
── Error ('test-allelematch_6-amUnique_negative.R:40:5'): Validation of arguments to amUnique() is working ──
Error: allelematch: please specify alleleMismatch OR matchThreshold OR cutHeight
Backtrace:
▆
1. ├─testthat::expect_error(...) at test-allelematch_6-amUnique_negative.R:40:5
2. │ └─testthat:::expect_condition_matching_(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. └─allelematch::amUnique(amdata, multilocusMap = c(1, 1, 2, 2))
[ FAIL 2 | WARN 0 | SKIP 24 | PASS 135 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.2.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [12m/13m]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(amregtest)
Loading required package: allelematch
Loading required package: dynamicTreeCut
>
> test_check("amregtest")
Saving _problems/test-allelematch_3-amPairwise_negative-45.R
Cleaning up 1 leaked TEMP file(s):
/tmp/RtmpTOFCr8/working_dir/RtmpilU2wU/pdfa7dcc6219965b
Cleaning up 1 leaked TEMP file(s):
/tmp/RtmpTOFCr8/working_dir/RtmpilU2wU/pdfa7dcc388a483
Cleaning up 1 leaked TEMP file(s):
/tmp/RtmpTOFCr8/working_dir/RtmpilU2wU/pdfa7dcc3cd33918
Cleaning up 1 leaked TEMP file(s):
/tmp/RtmpTOFCr8/working_dir/RtmpilU2wU/pdfa7dcc413a2994
Cleaning up 1 leaked TEMP file(s):
/tmp/RtmpTOFCr8/working_dir/RtmpilU2wU/pdfa7dcc1645a4a3
[ FAIL 2 | WARN 0 | SKIP 24 | PASS 135 ]
══ Skipped tests (24) ══════════════════════════════════════════════════════════
• On CRAN (24): 'test-allelematch_1-amDataset.R:47:1',
'test-allelematch_1-amDataset.R:147:1', 'test-allelematch_2-amMatrix.R:2:1',
'test-allelematch_2-amMatrix.R:90:1',
'test-allelematch_2-amMatrix_negative.R:2:1',
'test-allelematch_3-amPairwise.R:7:1',
'test-allelematch_3-amPairwise.R:74:1',
'test-allelematch_3-amPairwise_print.R:2:1',
'test-allelematch_4-amCluster-Ex1.R:2:1',
'test-allelematch_4-amCluster-Ex2.R:2:1',
'test-allelematch_4-amCluster-Ex3.R:2:1',
'test-allelematch_4-amCluster-Ex4.R:2:1',
'test-allelematch_4-amCluster-Ex5.R:2:1',
'test-allelematch_4-amCluster-amMini.R:2:1',
'test-allelematch_4-amCluster_print.R:2:1',
'test-allelematch_5-amAlleleFreq.R:2:1', 'test-allelematch_6-amUnique.R:2:1',
'test-allelematch_6-amUnique_print.R:2:1',
'test-allelematch_7-amUniqueProfile.R:2:1', 'test-amExample1.R:10:1',
'test-amExample2.R:10:1', 'test-amExample3.R:11:1', 'test-amExample4.R:15:1',
'test-ggData.R:11:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-allelematch_3-amPairwise_negative.R:45:5'): Validation of arguments to amPairwise() is working ──
Error: allelematch: please specify alleleMismatch OR matchThreshold
Backtrace:
▆
1. ├─testthat::expect_error(amPairwise(amdataOdd2), "allelematch:\\s+please specify alleleMismatch OR matchThreshold.") at test-allelematch_3-amPairwise_negative.R:45:5
2. │ └─testthat:::expect_condition_matching_(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. └─allelematch::amPairwise(amdataOdd2)
── Error ('test-allelematch_6-amUnique_negative.R:40:5'): Validation of arguments to amUnique() is working ──
Error: allelematch: please specify alleleMismatch OR matchThreshold OR cutHeight
Backtrace:
▆
1. ├─testthat::expect_error(...) at test-allelematch_6-amUnique_negative.R:40:5
2. │ └─testthat:::expect_condition_matching_(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. └─allelematch::amUnique(amdata, multilocusMap = c(1, 1, 2, 2))
[ FAIL 2 | WARN 0 | SKIP 24 | PASS 135 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 1.2.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [341s/351s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(amregtest)
Loading required package: allelematch
Loading required package: dynamicTreeCut
>
> test_check("amregtest")
Saving _problems/test-allelematch_3-amPairwise_negative-45.R
Cleaning up 1 leaked TEMP file(s):
/tmp/Rtmpdzf79r/working_dir/RtmphyIgpu/pdf488262b2fcecc
Cleaning up 1 leaked TEMP file(s):
/tmp/Rtmpdzf79r/working_dir/RtmphyIgpu/pdf4882636c84324
Cleaning up 1 leaked TEMP file(s):
/tmp/Rtmpdzf79r/working_dir/RtmphyIgpu/pdf488263f63bd56
Cleaning up 1 leaked TEMP file(s):
/tmp/Rtmpdzf79r/working_dir/RtmphyIgpu/pdf488263c4f6080
Cleaning up 1 leaked TEMP file(s):
/tmp/Rtmpdzf79r/working_dir/RtmphyIgpu/pdf48826b0adc58
[ FAIL 2 | WARN 0 | SKIP 24 | PASS 135 ]
══ Skipped tests (24) ══════════════════════════════════════════════════════════
• On CRAN (24): 'test-allelematch_1-amDataset.R:47:1',
'test-allelematch_1-amDataset.R:147:1', 'test-allelematch_2-amMatrix.R:2:1',
'test-allelematch_2-amMatrix.R:90:1',
'test-allelematch_2-amMatrix_negative.R:2:1',
'test-allelematch_3-amPairwise.R:7:1',
'test-allelematch_3-amPairwise.R:74:1',
'test-allelematch_3-amPairwise_print.R:2:1',
'test-allelematch_4-amCluster-Ex1.R:2:1',
'test-allelematch_4-amCluster-Ex2.R:2:1',
'test-allelematch_4-amCluster-Ex3.R:2:1',
'test-allelematch_4-amCluster-Ex4.R:2:1',
'test-allelematch_4-amCluster-Ex5.R:2:1',
'test-allelematch_4-amCluster-amMini.R:2:1',
'test-allelematch_4-amCluster_print.R:2:1',
'test-allelematch_5-amAlleleFreq.R:2:1', 'test-allelematch_6-amUnique.R:2:1',
'test-allelematch_6-amUnique_print.R:2:1',
'test-allelematch_7-amUniqueProfile.R:2:1', 'test-amExample1.R:10:1',
'test-amExample2.R:10:1', 'test-amExample3.R:11:1', 'test-amExample4.R:15:1',
'test-ggData.R:11:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-allelematch_3-amPairwise_negative.R:45:5'): Validation of arguments to amPairwise() is working ──
Error: allelematch: please specify alleleMismatch OR matchThreshold
Backtrace:
▆
1. ├─testthat::expect_error(amPairwise(amdataOdd2), "allelematch:\\s+please specify alleleMismatch OR matchThreshold.") at test-allelematch_3-amPairwise_negative.R:45:5
2. │ └─testthat:::expect_condition_matching_(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. └─allelematch::amPairwise(amdataOdd2)
── Error ('test-allelematch_6-amUnique_negative.R:40:5'): Validation of arguments to amUnique() is working ──
Error: allelematch: please specify alleleMismatch OR matchThreshold OR cutHeight
Backtrace:
▆
1. ├─testthat::expect_error(...) at test-allelematch_6-amUnique_negative.R:40:5
2. │ └─testthat:::expect_condition_matching_(...)
3. │ └─testthat:::quasi_capture(...)
4. │ ├─testthat (local) .capture(...)
5. │ │ └─base::withCallingHandlers(...)
6. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
7. └─allelematch::amUnique(amdata, multilocusMap = c(1, 1, 2, 2))
[ FAIL 2 | WARN 0 | SKIP 24 | PASS 135 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc