Last updated on 2025-03-12 23:53:56 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.0 | 83.45 | 177.34 | 260.79 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.0 | 61.08 | 129.58 | 190.66 | OK | |
| r-devel-linux-x86_64-fedora-clang | 1.0 | 491.21 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 1.0 | 428.82 | OK | |||
| r-devel-macos-arm64 | 1.0 | 139.00 | OK | |||
| r-devel-macos-x86_64 | 1.0 | 240.00 | OK | |||
| r-devel-windows-x86_64 | 1.0 | 102.00 | 238.00 | 340.00 | ERROR | |
| r-patched-linux-x86_64 | 1.0 | NOTE | ||||
| r-release-linux-x86_64 | 1.0 | 77.83 | 166.26 | 244.09 | NOTE | |
| r-release-macos-arm64 | 1.0 | 122.00 | NOTE | |||
| r-release-macos-x86_64 | 1.0 | 287.00 | NOTE | |||
| r-release-windows-x86_64 | 1.0 | 98.00 | 202.00 | 300.00 | NOTE | |
| r-oldrel-macos-arm64 | 1.0 | 9.00 | ERROR | |||
| r-oldrel-macos-x86_64 | 1.0 | 12.00 | ERROR | |||
| r-oldrel-windows-x86_64 | 1.0 | 114.00 | 264.00 | 378.00 | NOTE |
Version: 1.0
Check: tests
Result: ERROR
Running 'testthat.R' [65s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(kmeRtone)
>
> testthat::test_check("kmeRtone")
------------------------------------------------------------
Extraction of Case K-mers
------------------------------------------------------------
Extracting 2-mers from chr20............[ FAIL 1 | WARN 1 | SKIP 0 | PASS 0 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_score.R:25:1'): (code run outside of `test_that()`) ────────────
Error in `download.file(file, tmpFile, method = method, mode = "wb", quiet = !showProgress)`: cannot open URL 'https://hgdownload.soe.ucsc.edu/goldenPath/hg19/chromosomes/'
Backtrace:
▆
1. └─kmeRtone::kmeRtone(...) at test_score.R:25:1
2. └─kmeRtone::SCORE(...)
3. └─kmeRtone::extractKmers(...)
4. └─future.apply::future_lapply(...)
5. └─future.apply:::future_xapply(...)
6. ├─future::value(fs)
7. └─future:::value.list(fs)
8. ├─future::resolve(...)
9. └─future:::resolve.list(...)
10. └─future (local) signalConditionsASAP(obj, resignal = FALSE, pos = ii)
11. └─future:::signalConditions(...)
[ FAIL 1 | WARN 1 | SKIP 0 | PASS 0 ]
Error: Test failures
Execution halted
Flavor: r-devel-windows-x86_64
Version: 1.0
Check: for GNU extensions in Makefiles
Result: NOTE
GNU make is a SystemRequirements.
Flavors: r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-windows-x86_64
Version: 1.0
Check: installed package size
Result: NOTE
installed size is 5.4Mb
sub-directories of 1Mb or more:
libs 3.8Mb
Flavors: r-release-macos-arm64, r-release-macos-x86_64
Version: 1.0
Check: package dependencies
Result: ERROR
Package required but not available: ‘seqLogo’
See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’
manual.
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64