Last updated on 2024-06-12 19:54:26 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.0.0 | 2.80 | 31.72 | 34.52 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.0.0 | 2.14 | 20.78 | 22.92 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 1.0.0 | 43.87 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 1.0.0 | 41.21 | OK | |||
| r-devel-windows-x86_64 | 1.0.0 | 3.00 | 47.00 | 50.00 | OK | |
| r-patched-linux-x86_64 | 1.0.0 | 2.80 | 30.06 | 32.86 | OK | |
| r-release-linux-x86_64 | 1.0.0 | 3.01 | 29.98 | 32.99 | OK | |
| r-release-macos-arm64 | 1.0.0 | 17.00 | OK | |||
| r-release-macos-x86_64 | 1.0.0 | 27.00 | OK | |||
| r-release-windows-x86_64 | 1.0.0 | 4.00 | 47.00 | 51.00 | OK | |
| r-oldrel-macos-arm64 | 1.0.0 | 19.00 | OK | |||
| r-oldrel-macos-x86_64 | 1.0.0 | 25.00 | OK | |||
| r-oldrel-windows-x86_64 | 1.0.0 | 4.00 | 50.00 | 54.00 | OK |
Version: 1.0.0
Check: package dependencies
Result: NOTE
Packages suggested but not available for checking: 'ggplot2', 'reshape2'
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.0.0
Check: examples
Result: ERROR
Running examples in ‘matrixStrucTest-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: matrixStrucTest
> ### Title: Permutation p-values for Gamma and t-statistics
> ### Aliases: matrixStrucTest
>
> ### ** Examples
>
> # example for matrixStrucTest package
> library(matrixStrucTest)
> data("big5")
>
> # get column numbers for questionnaire items
> items <- grep("[0-9]", colnames(big5))
>
> # compute Spearman's correlation matrix
> A <- cor(big5[, items], use = "complete.obs", method = "spearman")
>
> # specify the groups
> groups <- "extrovert ~ E1 + E2 + E3 + E4 + E5 + E6 + E7 + E8 + E9 + E10
+ neurotic ~ N1 + N2 + N3 + N4 + N5 + N6 + N7 + N8 + N9 + N10
+ agreeable ~ A1 + A2 + A3 + A4 + A5 + A6 + A7 + A8 + A9 + A10
+ conscientious ~ C1 + C2 + C3 + C4 + C5 + C6 + C7 + C8 + C9 + C10
+ open ~ O1 + O2 + O3 + O4 + O5 + O6 + O7 + O8 + O9 + O10"
>
> # compute permutation p-values
> # Note: Using small B for fast checking on CRAN. Set B >= 1000 in practice.
> result <- matrixStrucTest(A = A, groups = groups, B = 100, absolute = TRUE)
>
> # Note: two-sided p-values from Hubert's Gamma printed by default
> # other results available by directing accessing them from the
> # returned object
> result
Test of matrix structure
100 Monte Carlo resamples, two-sided p-values
Overall Hubert's Gamma
Gamma0 = 0.783, p-val < 0.01
Block-specific Hubert's Gamma
Gamma0 pval
extrovert 0.784 < 0.01
neurotic 0.771 < 0.01
agreeable 0.667 < 0.01
conscientious 0.712 < 0.01
open 0.727 < 0.01
>
> # Alternative approach for specifying the groups as a list of column/row indices
> extrovert <- grep("E", colnames(A))
> neurotic <- grep("N", colnames(A))
> agreeable <- grep("A", colnames(A))
> conscientious <- grep("C", colnames(A))
> open <- grep("O", colnames(A))
>
> # put blocks/groups in list
> group_list <- list(extrovert = extrovert,
+ neurotic = neurotic,
+ agreeable = agreeable,
+ conscientious = conscientious,
+ open = open)
>
> # Note: Using small B for fast checking on CRAN. Set B >= 1000 in practice.
> result <- matrixStrucTest(A = A, group_list = group_list, B = 100, absolute = TRUE)
>
> # Note: two-sided p-values from Hubert's Gamma printed by default
> # other results available by directing accessing them from the
> # returned object
> result
Test of matrix structure
100 Monte Carlo resamples, two-sided p-values
Overall Hubert's Gamma
Gamma0 = 0.783, p-val < 0.01
Block-specific Hubert's Gamma
Gamma0 pval
extrovert 0.784 < 0.01
neurotic 0.771 < 0.01
agreeable 0.667 < 0.01
conscientious 0.712 < 0.01
open 0.727 < 0.01
>
> # Visualize groups
> library(ggplot2)
Error in library(ggplot2) : there is no package called ‘ggplot2’
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc