Last updated on 2024-09-09 18:49:39 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.1 | 6.20 | 94.97 | 101.17 | NOTE | |
| r-devel-linux-x86_64-debian-gcc | 1.1 | 5.17 | 66.96 | 72.13 | NOTE | |
| r-devel-linux-x86_64-fedora-clang | 1.1 | 169.79 | NOTE | |||
| r-devel-linux-x86_64-fedora-gcc | 1.1 | 149.37 | NOTE | |||
| r-devel-windows-x86_64 | 1.1 | 10.00 | 184.00 | 194.00 | NOTE | |
| r-patched-linux-x86_64 | 1.1 | 9.61 | 87.49 | 97.10 | OK | |
| r-release-linux-x86_64 | 1.1 | 6.13 | 88.32 | 94.45 | OK | |
| r-release-macos-arm64 | 1.1 | 61.00 | OK | |||
| r-release-macos-x86_64 | 1.1 | 87.00 | OK | |||
| r-release-windows-x86_64 | 1.1 | 8.00 | 176.00 | 184.00 | OK | |
| r-oldrel-macos-arm64 | 1.1 | 65.00 | OK | |||
| r-oldrel-macos-x86_64 | 1.1 | 100.00 | OK | |||
| r-oldrel-windows-x86_64 | 1.1 | 7.00 | 221.00 | 228.00 | OK |
Version: 1.1
Check: Rd cross-references
Result: NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
mif2.Rd: mif2,pomp-method
panelPomp-package.Rd: pomp-package
panelPomp.Rd: pomp
pfilter.Rd: pfilter,pomp-method
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-windows-x86_64
Version: 1.1
Check: tests
Result: NOTE
Running ‘_options.R’ [1s/1s]
Comparing ‘_options.Rout’ to ‘_options.Rout.save’ ... OK
Running ‘aaa.R’ [1s/1s]
Comparing ‘aaa.Rout’ to ‘aaa.Rout.save’ ... OK
Running ‘contacts.R’ [15s/20s]
Comparing ‘contacts.Rout’ to ‘contacts.Rout.save’ ...14c14
< name [,1] [,2] [,3] [,4]
---
> variable [,1] [,2] [,3] [,4]
17c17
< name [,1] [,2] [,3] [,4]
---
> variable [,1] [,2] [,3] [,4]
Running ‘get_col_row.R’ [1s/1s]
Comparing ‘get_col_row.Rout’ to ‘get_col_row.Rout.save’ ... OK
Running ‘mif2.R’ [2s/3s]
Comparing ‘mif2.Rout’ to ‘mif2.Rout.save’ ... OK
Running ‘mif2_intern.R’ [2s/3s]
Comparing ‘mif2_intern.Rout’ to ‘mif2_intern.Rout.save’ ... OK
Running ‘mif2_methods.R’ [2s/2s]
Comparing ‘mif2_methods.Rout’ to ‘mif2_methods.Rout.save’ ... OK
Running ‘panelGompertz.R’ [2s/2s]
Comparing ‘panelGompertz.Rout’ to ‘panelGompertz.Rout.save’ ...14c14
< name [,1] [,2] [,3] [,4] [,5]
---
> variable [,1] [,2] [,3] [,4] [,5]
17c17
< name [,1] [,2] [,3] [,4] [,5]
---
> variable [,1] [,2] [,3] [,4] [,5]
Running ‘panelGompertzLikelihood.R’ [3s/4s]
Comparing ‘panelGompertzLikelihood.Rout’ to ‘panelGompertzLikelihood.Rout.save’ ... OK
Running ‘panelPomp.R’ [2s/4s]
Comparing ‘panelPomp.Rout’ to ‘panelPomp.Rout.save’ ... OK
Running ‘panelPomp_methods.R’ [2s/3s]
Comparing ‘panelPomp_methods.Rout’ to ‘panelPomp_methods.Rout.save’ ... OK
Running ‘panelRandomWalk.R’ [2s/2s]
Comparing ‘panelRandomWalk.Rout’ to ‘panelRandomWalk.Rout.save’ ...14c14
< name [,1] [,2] [,3] [,4] [,5]
---
> variable [,1] [,2] [,3] [,4] [,5]
17c17
< name [,1] [,2] [,3] [,4] [,5]
---
> variable [,1] [,2] [,3] [,4] [,5]
Running ‘panel_loglik.R’ [1s/2s]
Comparing ‘panel_loglik.Rout’ to ‘panel_loglik.Rout.save’ ... OK
Running ‘params.R’ [2s/2s]
Comparing ‘params.Rout’ to ‘params.Rout.save’ ... OK
Running ‘pfilter.R’ [3s/4s]
Comparing ‘pfilter.Rout’ to ‘pfilter.Rout.save’ ... OK
Running ‘pfilter_methods.R’ [2s/3s]
Comparing ‘pfilter_methods.Rout’ to ‘pfilter_methods.Rout.save’ ... OK
Running ‘plot.R’ [2s/3s]
Comparing ‘plot.Rout’ to ‘plot.Rout.save’ ... OK
Running ‘print-results.R’ [2s/3s]
Comparing ‘print-results.Rout’ to ‘print-results.Rout.save’ ...26c26
< name [,1] [,2] [,3] [,4] [,5] [,6]
---
> variable [,1] [,2] [,3] [,4] [,5] [,6]
31c31
< name [,1] [,2] [,3] [,4] [,5] [,6]
---
> variable [,1] [,2] [,3] [,4] [,5] [,6]
Running ‘seeded-results.R’ [2s/3s]
Comparing ‘seeded-results.Rout’ to ‘seeded-results.Rout.save’ ... OK
Running ‘simulate.R’ [2s/2s]
Comparing ‘simulate.Rout’ to ‘simulate.Rout.save’ ...11c11
< name [,1] [,2] [,3] [,4] [,5]
---
> variable [,1] [,2] [,3] [,4] [,5]
Flavor: r-devel-linux-x86_64-debian-clang
Version: 1.1
Check: tests
Result: NOTE
Running ‘_options.R’ [1s/1s]
Comparing ‘_options.Rout’ to ‘_options.Rout.save’ ... OK
Running ‘aaa.R’ [1s/1s]
Comparing ‘aaa.Rout’ to ‘aaa.Rout.save’ ... OK
Running ‘contacts.R’ [8s/11s]
Comparing ‘contacts.Rout’ to ‘contacts.Rout.save’ ...14c14
< name [,1] [,2] [,3] [,4]
---
> variable [,1] [,2] [,3] [,4]
17c17
< name [,1] [,2] [,3] [,4]
---
> variable [,1] [,2] [,3] [,4]
Running ‘get_col_row.R’ [1s/1s]
Comparing ‘get_col_row.Rout’ to ‘get_col_row.Rout.save’ ... OK
Running ‘mif2.R’ [1s/2s]
Comparing ‘mif2.Rout’ to ‘mif2.Rout.save’ ... OK
Running ‘mif2_intern.R’ [1s/2s]
Comparing ‘mif2_intern.Rout’ to ‘mif2_intern.Rout.save’ ... OK
Running ‘mif2_methods.R’ [1s/2s]
Comparing ‘mif2_methods.Rout’ to ‘mif2_methods.Rout.save’ ... OK
Running ‘panelGompertz.R’ [1s/2s]
Comparing ‘panelGompertz.Rout’ to ‘panelGompertz.Rout.save’ ...14c14
< name [,1] [,2] [,3] [,4] [,5]
---
> variable [,1] [,2] [,3] [,4] [,5]
17c17
< name [,1] [,2] [,3] [,4] [,5]
---
> variable [,1] [,2] [,3] [,4] [,5]
Running ‘panelGompertzLikelihood.R’ [2s/2s]
Comparing ‘panelGompertzLikelihood.Rout’ to ‘panelGompertzLikelihood.Rout.save’ ... OK
Running ‘panelPomp.R’ [2s/3s]
Comparing ‘panelPomp.Rout’ to ‘panelPomp.Rout.save’ ... OK
Running ‘panelPomp_methods.R’ [2s/2s]
Comparing ‘panelPomp_methods.Rout’ to ‘panelPomp_methods.Rout.save’ ... OK
Running ‘panelRandomWalk.R’ [1s/1s]
Comparing ‘panelRandomWalk.Rout’ to ‘panelRandomWalk.Rout.save’ ...14c14
< name [,1] [,2] [,3] [,4] [,5]
---
> variable [,1] [,2] [,3] [,4] [,5]
17c17
< name [,1] [,2] [,3] [,4] [,5]
---
> variable [,1] [,2] [,3] [,4] [,5]
Running ‘panel_loglik.R’ [1s/1s]
Comparing ‘panel_loglik.Rout’ to ‘panel_loglik.Rout.save’ ... OK
Running ‘params.R’ [1s/2s]
Comparing ‘params.Rout’ to ‘params.Rout.save’ ... OK
Running ‘pfilter.R’ [2s/3s]
Comparing ‘pfilter.Rout’ to ‘pfilter.Rout.save’ ... OK
Running ‘pfilter_methods.R’ [1s/2s]
Comparing ‘pfilter_methods.Rout’ to ‘pfilter_methods.Rout.save’ ... OK
Running ‘plot.R’ [1s/2s]
Comparing ‘plot.Rout’ to ‘plot.Rout.save’ ... OK
Running ‘print-results.R’ [1s/2s]
Comparing ‘print-results.Rout’ to ‘print-results.Rout.save’ ...26c26
< name [,1] [,2] [,3] [,4] [,5] [,6]
---
> variable [,1] [,2] [,3] [,4] [,5] [,6]
31c31
< name [,1] [,2] [,3] [,4] [,5] [,6]
---
> variable [,1] [,2] [,3] [,4] [,5] [,6]
Running ‘seeded-results.R’ [2s/2s]
Comparing ‘seeded-results.Rout’ to ‘seeded-results.Rout.save’ ... OK
Running ‘simulate.R’ [1s/2s]
Comparing ‘simulate.Rout’ to ‘simulate.Rout.save’ ...11c11
< name [,1] [,2] [,3] [,4] [,5]
---
> variable [,1] [,2] [,3] [,4] [,5]
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.1
Check: tests
Result: NOTE
Running ‘_options.R’
Comparing ‘_options.Rout’ to ‘_options.Rout.save’ ... OK
Running ‘aaa.R’
Comparing ‘aaa.Rout’ to ‘aaa.Rout.save’ ... OK
Running ‘contacts.R’ [24s/66s]
Comparing ‘contacts.Rout’ to ‘contacts.Rout.save’ ...14c14
< name [,1] [,2] [,3] [,4]
---
> variable [,1] [,2] [,3] [,4]
17c17
< name [,1] [,2] [,3] [,4]
---
> variable [,1] [,2] [,3] [,4]
Running ‘get_col_row.R’
Comparing ‘get_col_row.Rout’ to ‘get_col_row.Rout.save’ ... OK
Running ‘mif2.R’
Comparing ‘mif2.Rout’ to ‘mif2.Rout.save’ ... OK
Running ‘mif2_intern.R’
Comparing ‘mif2_intern.Rout’ to ‘mif2_intern.Rout.save’ ... OK
Running ‘mif2_methods.R’
Comparing ‘mif2_methods.Rout’ to ‘mif2_methods.Rout.save’ ... OK
Running ‘panelGompertz.R’
Comparing ‘panelGompertz.Rout’ to ‘panelGompertz.Rout.save’ ...14c14
< name [,1] [,2] [,3] [,4] [,5]
---
> variable [,1] [,2] [,3] [,4] [,5]
17c17
< name [,1] [,2] [,3] [,4] [,5]
---
> variable [,1] [,2] [,3] [,4] [,5]
Running ‘panelGompertzLikelihood.R’ [5s/12s]
Comparing ‘panelGompertzLikelihood.Rout’ to ‘panelGompertzLikelihood.Rout.save’ ... OK
Running ‘panelPomp.R’ [4s/10s]
Comparing ‘panelPomp.Rout’ to ‘panelPomp.Rout.save’ ... OK
Running ‘panelPomp_methods.R’ [4s/10s]
Comparing ‘panelPomp_methods.Rout’ to ‘panelPomp_methods.Rout.save’ ... OK
Running ‘panelRandomWalk.R’
Comparing ‘panelRandomWalk.Rout’ to ‘panelRandomWalk.Rout.save’ ...14c14
< name [,1] [,2] [,3] [,4] [,5]
---
> variable [,1] [,2] [,3] [,4] [,5]
17c17
< name [,1] [,2] [,3] [,4] [,5]
---
> variable [,1] [,2] [,3] [,4] [,5]
Running ‘panel_loglik.R’
Comparing ‘panel_loglik.Rout’ to ‘panel_loglik.Rout.save’ ... OK
Running ‘params.R’
Comparing ‘params.Rout’ to ‘params.Rout.save’ ... OK
Running ‘pfilter.R’ [4s/12s]
Comparing ‘pfilter.Rout’ to ‘pfilter.Rout.save’ ... OK
Running ‘pfilter_methods.R’
Comparing ‘pfilter_methods.Rout’ to ‘pfilter_methods.Rout.save’ ... OK
Running ‘plot.R’
Comparing ‘plot.Rout’ to ‘plot.Rout.save’ ... OK
Running ‘print-results.R’
Comparing ‘print-results.Rout’ to ‘print-results.Rout.save’ ...26c26
< name [,1] [,2] [,3] [,4] [,5] [,6]
---
> variable [,1] [,2] [,3] [,4] [,5] [,6]
31c31
< name [,1] [,2] [,3] [,4] [,5] [,6]
---
> variable [,1] [,2] [,3] [,4] [,5] [,6]
Running ‘seeded-results.R’ [4s/11s]
Comparing ‘seeded-results.Rout’ to ‘seeded-results.Rout.save’ ... OK
Running ‘simulate.R’
Comparing ‘simulate.Rout’ to ‘simulate.Rout.save’ ...11c11
< name [,1] [,2] [,3] [,4] [,5]
---
> variable [,1] [,2] [,3] [,4] [,5]
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 1.1
Check: tests
Result: NOTE
Running ‘_options.R’
Comparing ‘_options.Rout’ to ‘_options.Rout.save’ ... OK
Running ‘aaa.R’
Comparing ‘aaa.Rout’ to ‘aaa.Rout.save’ ... OK
Running ‘contacts.R’ [21s/24s]
Comparing ‘contacts.Rout’ to ‘contacts.Rout.save’ ...14c14
< name [,1] [,2] [,3] [,4]
---
> variable [,1] [,2] [,3] [,4]
17c17
< name [,1] [,2] [,3] [,4]
---
> variable [,1] [,2] [,3] [,4]
Running ‘get_col_row.R’
Comparing ‘get_col_row.Rout’ to ‘get_col_row.Rout.save’ ... OK
Running ‘mif2.R’
Comparing ‘mif2.Rout’ to ‘mif2.Rout.save’ ... OK
Running ‘mif2_intern.R’
Comparing ‘mif2_intern.Rout’ to ‘mif2_intern.Rout.save’ ... OK
Running ‘mif2_methods.R’
Comparing ‘mif2_methods.Rout’ to ‘mif2_methods.Rout.save’ ... OK
Running ‘panelGompertz.R’
Comparing ‘panelGompertz.Rout’ to ‘panelGompertz.Rout.save’ ...14c14
< name [,1] [,2] [,3] [,4] [,5]
---
> variable [,1] [,2] [,3] [,4] [,5]
17c17
< name [,1] [,2] [,3] [,4] [,5]
---
> variable [,1] [,2] [,3] [,4] [,5]
Running ‘panelGompertzLikelihood.R’
Comparing ‘panelGompertzLikelihood.Rout’ to ‘panelGompertzLikelihood.Rout.save’ ... OK
Running ‘panelPomp.R’
Comparing ‘panelPomp.Rout’ to ‘panelPomp.Rout.save’ ... OK
Running ‘panelPomp_methods.R’
Comparing ‘panelPomp_methods.Rout’ to ‘panelPomp_methods.Rout.save’ ... OK
Running ‘panelRandomWalk.R’
Comparing ‘panelRandomWalk.Rout’ to ‘panelRandomWalk.Rout.save’ ...14c14
< name [,1] [,2] [,3] [,4] [,5]
---
> variable [,1] [,2] [,3] [,4] [,5]
17c17
< name [,1] [,2] [,3] [,4] [,5]
---
> variable [,1] [,2] [,3] [,4] [,5]
Running ‘panel_loglik.R’
Comparing ‘panel_loglik.Rout’ to ‘panel_loglik.Rout.save’ ... OK
Running ‘params.R’
Comparing ‘params.Rout’ to ‘params.Rout.save’ ... OK
Running ‘pfilter.R’
Comparing ‘pfilter.Rout’ to ‘pfilter.Rout.save’ ... OK
Running ‘pfilter_methods.R’
Comparing ‘pfilter_methods.Rout’ to ‘pfilter_methods.Rout.save’ ... OK
Running ‘plot.R’
Comparing ‘plot.Rout’ to ‘plot.Rout.save’ ... OK
Running ‘print-results.R’
Comparing ‘print-results.Rout’ to ‘print-results.Rout.save’ ...26c26
< name [,1] [,2] [,3] [,4] [,5] [,6]
---
> variable [,1] [,2] [,3] [,4] [,5] [,6]
31c31
< name [,1] [,2] [,3] [,4] [,5] [,6]
---
> variable [,1] [,2] [,3] [,4] [,5] [,6]
Running ‘seeded-results.R’
Comparing ‘seeded-results.Rout’ to ‘seeded-results.Rout.save’ ... OK
Running ‘simulate.R’
Comparing ‘simulate.Rout’ to ‘simulate.Rout.save’ ...11c11
< name [,1] [,2] [,3] [,4] [,5]
---
> variable [,1] [,2] [,3] [,4] [,5]
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 1.1
Check: tests
Result: NOTE
Running '_options.R' [1s]
Comparing '_options.Rout' to '_options.Rout.save' ... OK
Running 'aaa.R' [1s]
Comparing 'aaa.Rout' to 'aaa.Rout.save' ... OK
Running 'contacts.R' [12s]
Comparing 'contacts.Rout' to 'contacts.Rout.save' ...14c14
< name [,1] [,2] [,3] [,4]
---
> variable [,1] [,2] [,3] [,4]
17c17
< name [,1] [,2] [,3] [,4]
---
> variable [,1] [,2] [,3] [,4]
Running 'get_col_row.R' [1s]
Comparing 'get_col_row.Rout' to 'get_col_row.Rout.save' ... OK
Running 'mif2.R' [4s]
Comparing 'mif2.Rout' to 'mif2.Rout.save' ... OK
Running 'mif2_intern.R' [4s]
Comparing 'mif2_intern.Rout' to 'mif2_intern.Rout.save' ... OK
Running 'mif2_methods.R' [4s]
Comparing 'mif2_methods.Rout' to 'mif2_methods.Rout.save' ... OK
Running 'panelGompertz.R' [4s]
Comparing 'panelGompertz.Rout' to 'panelGompertz.Rout.save' ...14c14
< name [,1] [,2] [,3] [,4] [,5]
---
> variable [,1] [,2] [,3] [,4] [,5]
17c17
< name [,1] [,2] [,3] [,4] [,5]
---
> variable [,1] [,2] [,3] [,4] [,5]
Running 'panelGompertzLikelihood.R' [4s]
Comparing 'panelGompertzLikelihood.Rout' to 'panelGompertzLikelihood.Rout.save' ... OK
Running 'panelPomp.R' [6s]
Comparing 'panelPomp.Rout' to 'panelPomp.Rout.save' ... OK
Running 'panelPomp_methods.R' [6s]
Comparing 'panelPomp_methods.Rout' to 'panelPomp_methods.Rout.save' ... OK
Running 'panelRandomWalk.R' [4s]
Comparing 'panelRandomWalk.Rout' to 'panelRandomWalk.Rout.save' ...14c14
< name [,1] [,2] [,3] [,4] [,5]
---
> variable [,1] [,2] [,3] [,4] [,5]
17c17
< name [,1] [,2] [,3] [,4] [,5]
---
> variable [,1] [,2] [,3] [,4] [,5]
Running 'panel_loglik.R' [1s]
Comparing 'panel_loglik.Rout' to 'panel_loglik.Rout.save' ... OK
Running 'params.R' [4s]
Comparing 'params.Rout' to 'params.Rout.save' ... OK
Running 'pfilter.R' [7s]
Comparing 'pfilter.Rout' to 'pfilter.Rout.save' ... OK
Running 'pfilter_methods.R' [4s]
Comparing 'pfilter_methods.Rout' to 'pfilter_methods.Rout.save' ... OK
Running 'plot.R' [4s]
Comparing 'plot.Rout' to 'plot.Rout.save' ... OK
Running 'print-results.R' [4s]
Comparing 'print-results.Rout' to 'print-results.Rout.save' ...26c26
< name [,1] [,2] [,3] [,4] [,5] [,6]
---
> variable [,1] [,2] [,3] [,4] [,5] [,6]
31c31
< name [,1] [,2] [,3] [,4] [,5] [,6]
---
> variable [,1] [,2] [,3] [,4] [,5] [,6]
Running 'seeded-results.R' [4s]
Comparing 'seeded-results.Rout' to 'seeded-results.Rout.save' ... OK
Running 'simulate.R' [4s]
Comparing 'simulate.Rout' to 'simulate.Rout.save' ...11c11
< name [,1] [,2] [,3] [,4] [,5]
---
> variable [,1] [,2] [,3] [,4] [,5]
Flavor: r-devel-windows-x86_64