Last updated on 2024-09-17 03:49:47 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 3.0.6 | 9.08 | 284.57 | 293.65 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 3.0.7 | 5.94 | 189.97 | 195.91 | OK | |
| r-devel-linux-x86_64-fedora-clang | 3.0.7 | 459.79 | OK | |||
| r-devel-linux-x86_64-fedora-gcc | 3.0.7 | 483.04 | OK | |||
| r-devel-windows-x86_64 | 3.0.7 | 13.00 | 295.00 | 308.00 | OK | |
| r-patched-linux-x86_64 | 3.0.6 | 15.20 | 272.35 | 287.55 | OK | |
| r-release-linux-x86_64 | 3.0.6 | 8.27 | 271.54 | 279.81 | OK | |
| r-release-macos-arm64 | 3.0.7 | 119.00 | OK | |||
| r-release-macos-x86_64 | 3.0.7 | 195.00 | OK | |||
| r-release-windows-x86_64 | 3.0.6 | 11.00 | 305.00 | 316.00 | OK | |
| r-oldrel-macos-arm64 | 3.0.7 | 1068.00 | ERROR | |||
| r-oldrel-macos-x86_64 | 3.0.7 | 1803.00 | ERROR | |||
| r-oldrel-windows-x86_64 | 3.0.7 | 12.00 | 265.00 | 277.00 | OK |
Version: 3.0.6
Check: Rd cross-references
Result: NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
add_predicted_rvars.Rd: rvar
compose_data.Rd: mutate
nest_rvars.Rd: rvar
predict_curve.Rd: tbl_df, grouped_df, group_by
spread_rvars.Rd: rvar
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
Flavor: r-devel-linux-x86_64-debian-clang
Version: 3.0.6
Check: tests
Result: ERROR
Running ‘testthat.R’ [187s/222s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This is necessary because some tests fail otherwise; see https://github.com/hadley/testthat/issues/144
> Sys.setenv("R_TESTS" = "")
>
> library(testthat)
> library(tidybayes)
>
> test_check("tidybayes")
[ FAIL 1 | WARN 0 | SKIP 6 | PASS 400 ]
══ Skipped tests (6) ═══════════════════════════════════════════════════════════
• On CRAN (6): 'test.geom_dotsinterval.R:23:3', 'test.geom_interval.R:22:3',
'test.geom_pointinterval.R:21:3', 'test.stat_dist_slabinterval.R:23:3',
'test.stat_eye.R:20:3', 'test.stat_eye.R:51:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test.spread_draws.R:457:3'): nested ragged arrays are correctly extracted ──
spread_draws_long_(test_draws, "x", c(".", "."))[["x"]][[1]] not equal to array(...).
Attributes: < Component "dimnames": Component 2: target is NULL, current is character >
[ FAIL 1 | WARN 0 | SKIP 6 | PASS 400 ]
Deleting unused snapshots:
• test.geom_dotsinterval/stat-dotsh-with-a-group-with-1-dot.svg
• test.geom_interval/grouped-intervals-h-stat.svg
• test.geom_pointinterval/grouped-pointintervals-h-stat.svg
• test.stat_dist_slabinterval/ccdfintervalh-using-args.svg
• test.stat_eye/one-parameter-horizontal-eye-mode-hdi.svg
• test.stat_eye/one-parameter-horizontal-half-eye.svg
• test.stat_eye/one-parameter-vertical-eye.svg
• test.stat_eye/one-parameter-vertical-halfeye.svg
• test.stat_eye/two-parameter-factor-horizontal-eye-fill.svg
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 3.0.7
Check: running R code from vignettes
Result: ERROR
Errors in running code in vignettes:
when running code in ‘tidybayes-residuals.Rmd’
...
Chain 4: 7.567 seconds (Sampling)
Chain 4: 15.31 seconds (Total)
Chain 4:
> cens_df_o %>% add_residual_draws(m_o) %>% median_qi(.residual) %>%
+ ggplot(aes(sample = .residual)) + geom_qq() + geom_qq_line()
When sourcing ‘tidybayes-residuals.R’:
Error: Predictive errors are not defined for ordinal or categorical models.
Execution halted
when running code in ‘tidybayes.Rmd’
...
$n
[1] 50
> m = sampling(ABC_stan, data = compose_data(ABC), control = list(adapt_delta = 0.99))
When sourcing ‘tidybayes.R’:
Error: error in evaluating the argument 'object' in selecting a method for function 'sampling': object 'ABC_stan' not found
Execution halted
‘tidy-brms.Rmd’ using ‘UTF-8’... [239s/267s] OK
‘tidy-posterior.Rmd’ using ‘UTF-8’... [198s/212s] OK
‘tidy-rstanarm.Rmd’ using ‘UTF-8’... [29s/30s] OK
‘tidybayes-residuals.Rmd’ using ‘UTF-8’... failed
‘tidybayes.Rmd’ using ‘UTF-8’... failed
Flavor: r-oldrel-macos-arm64
Version: 3.0.7
Check: running R code from vignettes
Result: ERROR
Errors in running code in vignettes:
when running code in ‘tidy-brms.Rmd’
...
make would use
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/Rcpp/include/" -I"/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/" -I"/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/unsupported" -I"/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/BH/include" -I"/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/src/" -I"/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/" -I"/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppParallel/include/" -I"/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include" -DEIGEN_NO_DEBUG -DBOOST_DISABLE_ASSERTS -DBOOST_PENDING_INTEGER_LOG2_HPP -DSTAN_THREADS -DUSE_STANC3 -DSTRICT_R_HEADERS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -include '/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/prim/fun/Eigen.hpp' -D_REENTRANT -DRCPP_PARALLEL_USE_TBB=1 -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c file9a7739ddc6ed.cpp -o file9a7739ddc6ed.o
if test "zfile9a7739ddc6ed.o" != "z"; then \
echo clang++ -arch x86_64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L"/Library/Frameworks/R.framework/Resources/lib" -L/opt/R/x86_64/lib -o file9a7739ddc6ed.so file9a7739ddc6ed.o '/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/lib//libStanServices.a' -L'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/lib/' -lStanHeaders -L'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppParallel/lib/' -ltbb -L/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppParallel/lib -ltbb -ltbbmalloc -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation; \
clang++ -arch x86_64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L"/Library/Frameworks/R.framework/Resources/lib" -L/opt/R/x86_64/lib -o file9a7739ddc6ed.so file9a7739ddc6ed.o '/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/lib//libStanServices.a' -L'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/lib/' -lStanHeaders -L'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppParallel/lib/' -ltbb -L/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppParallel/lib -ltbb -ltbbmalloc -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation; \
fi
When sourcing ‘tidy-brms.R’:
Error: invalid connection
Execution halted
when running code in ‘tidy-posterior.Rmd’
...
make would use
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/Rcpp/include/" -I"/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/" -I"/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/unsupported" -I"/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/BH/include" -I"/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/src/" -I"/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/" -I"/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppParallel/include/" -I"/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include" -DEIGEN_NO_DEBUG -DBOOST_DISABLE_ASSERTS -DBOOST_PENDING_INTEGER_LOG2_HPP -DSTAN_THREADS -DUSE_STANC3 -DSTRICT_R_HEADERS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -include '/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/prim/fun/Eigen.hpp' -D_REENTRANT -DRCPP_PARALLEL_USE_TBB=1 -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c filed9d976966675.cpp -o filed9d976966675.o
if test "zfiled9d976966675.o" != "z"; then \
echo clang++ -arch x86_64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L"/Library/Frameworks/R.framework/Resources/lib" -L/opt/R/x86_64/lib -o filed9d976966675.so filed9d976966675.o '/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/lib//libStanServices.a' -L'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/lib/' -lStanHeaders -L'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppParallel/lib/' -ltbb -L/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppParallel/lib -ltbb -ltbbmalloc -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation; \
clang++ -arch x86_64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L"/Library/Frameworks/R.framework/Resources/lib" -L/opt/R/x86_64/lib -o filed9d976966675.so filed9d976966675.o '/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/lib//libStanServices.a' -L'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/lib/' -lStanHeaders -L'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppParallel/lib/' -ltbb -L/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppParallel/lib -ltbb -ltbbmalloc -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation; \
fi
When sourcing ‘tidy-posterior.R’:
Error: invalid connection
Execution halted
when running code in ‘tidybayes-residuals.Rmd’
...
make would use
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/Rcpp/include/" -I"/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/" -I"/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppEigen/include/unsupported" -I"/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/BH/include" -I"/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/src/" -I"/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/" -I"/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppParallel/include/" -I"/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/include" -DEIGEN_NO_DEBUG -DBOOST_DISABLE_ASSERTS -DBOOST_PENDING_INTEGER_LOG2_HPP -DSTAN_THREADS -DUSE_STANC3 -DSTRICT_R_HEADERS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -D_HAS_AUTO_PTR_ETC=0 -include '/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/include/stan/math/prim/fun/Eigen.hpp' -D_REENTRANT -DRCPP_PARALLEL_USE_TBB=1 -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c filee8174a20b04c.cpp -o filee8174a20b04c.o
if test "zfilee8174a20b04c.o" != "z"; then \
echo clang++ -arch x86_64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L"/Library/Frameworks/R.framework/Resources/lib" -L/opt/R/x86_64/lib -o filee8174a20b04c.so filee8174a20b04c.o '/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/lib//libStanServices.a' -L'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/lib/' -lStanHeaders -L'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppParallel/lib/' -ltbb -L/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppParallel/lib -ltbb -ltbbmalloc -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation; \
clang++ -arch x86_64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L"/Library/Frameworks/R.framework/Resources/lib" -L/opt/R/x86_64/lib -o filee8174a20b04c.so filee8174a20b04c.o '/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/rstan/lib//libStanServices.a' -L'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/StanHeaders/lib/' -lStanHeaders -L'/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppParallel/lib/' -ltbb -L/Volumes/Builds/packages/big-sur-x86_64/Rlib/4.3/RcppParallel/lib -ltbb -ltbbmalloc -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation; \
fi
When sourcing ‘tidybayes-residuals.R’:
Error: invalid connection
Execution halted
when running code in ‘tidybayes.Rmd’
...
$n
[1] 50
> m = sampling(ABC_stan, data = compose_data(ABC), control = list(adapt_delta = 0.99))
When sourcing ‘tidybayes.R’:
Error: error in evaluating the argument 'object' in selecting a method for function 'sampling': object 'ABC_stan' not found
Execution halted
‘tidy-brms.Rmd’ using ‘UTF-8’... failed
‘tidy-posterior.Rmd’ using ‘UTF-8’... failed
‘tidy-rstanarm.Rmd’ using ‘UTF-8’... [46s/53s] OK
‘tidybayes-residuals.Rmd’ using ‘UTF-8’... failed
‘tidybayes.Rmd’ using ‘UTF-8’... failed
Flavor: r-oldrel-macos-x86_64
Version: 3.0.7
Check: re-building of vignette outputs
Result: NOTE
Error(s) in re-building vignettes:
...
Error in saveRDS(list(base = base, value = ret0), dest) :
error writing to connection
Calls: <Anonymous> -> rownames -> <Anonymous> -> saveRDS
Execution halted
Flavor: r-oldrel-macos-x86_64
Version: 3.0.7
Check: PDF version of manual
Result: ERROR
Rd conversion errors:
Flavor: r-oldrel-macos-x86_64