Finding Allele-Specific Copy Number in Next-Generation Sequencing Data R package falcon version 0.2 This is a method for Allele-specific DNA Copy Number Profiling using Next-Generation Sequencing. Given the allele-specific coverage at the variant loci, this program segments the genome into regions of homogeneous allele-specific copy number. It requires, as input, the read counts for each variant allele in a pair of case and control samples. For detection of somatic mutations, the case and control samples can be the tumor and normal sample from the same individual. Software Depends: R (>= 3.0.1) Hao Chen <hxchen@ucdavis.edu> Comprehensive R Archive Network (CRAN) Hao Chen and Nancy R. Zhang GPL (>= 2) 2016-04-21 application/tgz https://CRAN.R-project.org/package=falcon doi:10.32614/CRAN.package.falcon