Fast K-Mer Counting and Clustering for Biological Sequence Analysis R package kmer version 1.1.3 Contains tools for rapidly computing distance matrices and clustering large sequence datasets using fast alignment-free k-mer counting and recursive k-means partitioning. See Vinga and Almeida (2003) <doi:10.1093/bioinformatics/btg005> for a review of k-mer counting methods and applications for biological sequence analysis. Software Imports: openssl, phylogram, Rcpp (>= 0.12.13) LinkingTo: Rcpp Suggests: ape (>= 4.0), dendextend, knitr, rmarkdown, testthat Shaun Wilkinson <shaunpwilkinson@gmail.com> Comprehensive R Archive Network (CRAN) Shaun Wilkinson [aut, cre] GPL-3 2026-01-23 application/tgz https://CRAN.R-project.org/package=kmer doi:10.32614/CRAN.package.kmer