DCLEAR: Distance Based Cell Lineage Reconstruction

R codes for distance based cell lineage reconstruction. Our methods won both sub-challenges 2 and 3 of the Allen Institute Cell Lineage Reconstruction DREAM Challenge in 2020. References: Gong et al. (2021) <doi:10.1016/j.cels.2021.05.008>, Gong et al. (2022) <doi:10.1186/s12859-022-04633-x>.

Version: 1.0.13
Depends: R (≥ 4.1.0), tensorflow (≥ 2.2.0)
Imports: BiocParallel, dplyr, Matrix, matrixStats, ape, phangorn, Rcpp, igraph, methods, purrr, stringr, tidyr, rBayesianOptimization, rlang, BiocGenerics
LinkingTo: Rcpp, RcppArmadillo
Suggests: knitr, rmarkdown, markdown
Published: 2023-09-14
DOI: 10.32614/CRAN.package.DCLEAR
Author: Il-Youp Kwak [aut, cre], Wuming Gong [aut]
Maintainer: Il-Youp Kwak <ikwak2 at cau.ac.kr>
License: GPL-3
URL: https://github.com/ikwak2/DCLEAR
NeedsCompilation: yes
Materials: README
CRAN checks: DCLEAR results


Reference manual: DCLEAR.pdf
Vignettes: prediction for subchallenge 3
DCLEAR : Distance based Cell LinEAge Reconstruction-weighted hamming


Package source: DCLEAR_1.0.13.tar.gz
Windows binaries: r-devel: DCLEAR_1.0.13.zip, r-release: DCLEAR_1.0.13.zip, r-oldrel: DCLEAR_1.0.13.zip
macOS binaries: r-release (arm64): DCLEAR_1.0.13.tgz, r-oldrel (arm64): DCLEAR_1.0.13.tgz, r-release (x86_64): DCLEAR_1.0.13.tgz, r-oldrel (x86_64): DCLEAR_1.0.13.tgz
Old sources: DCLEAR archive


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