EpiTest: Test for Gene x Gene Interactions in Bi-Parental Populations

Provides functions to test for gene x gene interactions in a bi-parental population of inbred lines. The data are fitted with the mixed linear model described in Rio et al. (2022) <doi:10.1101/2022.12.18.520958>, that accounts for gene x gene interactions at both the fixed effect and variance levels. The package also provides graphical tools to display the gene x gene interaction trend at the mean level and the variance component analysis.

Version: 1.0.0
Depends: R (≥ 3.5.0)
Imports: dplyr, ggplot2, ggrepel, magrittr, MM4LMM, purrr, stringr, utils
Published: 2022-12-20
DOI: 10.32614/CRAN.package.EpiTest
Author: Simon Rio ORCID iD [aut, cre], Tristan Mary-Huard ORCID iD [aut]
Maintainer: Simon Rio <simon.rio at cirad.fr>
License: GPL (≥ 3)
NeedsCompilation: no
CRAN checks: EpiTest results


Reference manual: EpiTest.pdf


Package source: EpiTest_1.0.0.tar.gz
Windows binaries: r-devel: EpiTest_1.0.0.zip, r-release: EpiTest_1.0.0.zip, r-oldrel: EpiTest_1.0.0.zip
macOS binaries: r-release (arm64): EpiTest_1.0.0.tgz, r-oldrel (arm64): EpiTest_1.0.0.tgz, r-release (x86_64): EpiTest_1.0.0.tgz, r-oldrel (x86_64): EpiTest_1.0.0.tgz


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