GOxploreR: Structural Exploration of the Gene Ontology (GO) Knowledge Base

It provides an effective, efficient, and fast way to explore the Gene Ontology (GO). Given a set of genes, the package contains functions to assess the GO and obtain the terms associated with the genes and the levels of the GO terms. The package provides functions for the three different GO ontology. We discussed the methods explicitly in the following article <doi:10.1038/s41598-020-73326-3>.

Version: 1.2.7
Depends: R (≥ 2.10), GO.db, gontr, ggraph
Imports: igraph, network, dplyr, biomaRt, annotate, graphics, ggplot2
Suggests: knitr, rmarkdown
Published: 2023-11-03
DOI: 10.32614/CRAN.package.GOxploreR
Author: Kalifa Manjang, Frank Emmert-Streib, Shailesh Tripathi, Olli Yli-Harja, Matthias Dehmer
Maintainer: Kalifa Manjang <kalifamanjang1 at gmail.com>
License: GPL-2
NeedsCompilation: no
In views: Omics
CRAN checks: GOxploreR results


Reference manual: GOxploreR.pdf
Vignettes: GOxploreR


Package source: GOxploreR_1.2.7.tar.gz
Windows binaries: r-devel: GOxploreR_1.2.7.zip, r-release: GOxploreR_1.2.7.zip, r-oldrel: GOxploreR_1.2.7.zip
macOS binaries: r-release (arm64): GOxploreR_1.2.7.tgz, r-oldrel (arm64): GOxploreR_1.2.7.tgz, r-release (x86_64): GOxploreR_1.2.7.tgz, r-oldrel (x86_64): GOxploreR_1.2.7.tgz
Old sources: GOxploreR archive


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