SAMtool: Stock Assessment Methods Toolkit

Simulation tools for closed-loop simulation are provided for the 'MSEtool' operating model to inform data-rich fisheries. 'SAMtool' provides a conditioning model, assessment models of varying complexity with standardized reporting, model-based management procedures, and diagnostic tools for evaluating assessments inside closed-loop simulation.

Version: 1.6.4
Depends: R (≥ 3.5.0), MSEtool (≥ 3.0.0)
Imports: TMB (≥ 1.9.0), abind, dplyr, gplots, graphics, methods, pbapply, rmarkdown, snowfall, stats, utils, vars
LinkingTo: TMB, RcppEigen
Suggests: caret, corpcor, covr, extraDistr, ggplot2, Gmisc, knitr, mvtnorm, numDeriv, reshape2, shiny, testthat, tmbstan, usethis
Published: 2024-02-15
DOI: 10.32614/CRAN.package.SAMtool
Author: Quang Huynh [aut, cre], Tom Carruthers [aut], Adrian Hordyk [aut]
Maintainer: Quang Huynh <quang at>
License: GPL-3
NeedsCompilation: yes
Materials: README NEWS
CRAN checks: SAMtool results


Reference manual: SAMtool.pdf


Package source: SAMtool_1.6.4.tar.gz
Windows binaries: r-devel:, r-release:, r-oldrel:
macOS binaries: r-release (arm64): SAMtool_1.6.4.tgz, r-oldrel (arm64): SAMtool_1.6.4.tgz, r-release (x86_64): SAMtool_1.6.4.tgz, r-oldrel (x86_64): SAMtool_1.6.4.tgz
Old sources: SAMtool archive

Reverse dependencies:

Reverse depends: openMSE


Please use the canonical form to link to this page.