SKAT: SNP-Set (Sequence) Kernel Association Test

Functions for kernel-regression-based association tests including Burden test, SKAT and SKAT-O. These methods aggregate individual SNP score statistics in a SNP set and efficiently compute SNP-set level p-values.

Version: 2.2.5
Depends: R (≥ 2.13.0), Matrix, SPAtest, RSpectra
Published: 2023-01-15
DOI: 10.32614/CRAN.package.SKAT
Author: Seunggeun (Shawn) Lee and Zhangchen Zhao, with contributions from Larisa Miropolsky and Michael Wu
Maintainer: Seunggeun (Shawn) Lee <lee7801 at>
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
NeedsCompilation: yes
CRAN checks: SKAT results


Reference manual: SKAT.pdf
Vignettes: SKAT


Package source: SKAT_2.2.5.tar.gz
Windows binaries: r-devel:, r-release:, r-oldrel:
macOS binaries: r-release (arm64): SKAT_2.2.5.tgz, r-oldrel (arm64): SKAT_2.2.5.tgz, r-release (x86_64): SKAT_2.2.5.tgz, r-oldrel (x86_64): SKAT_2.2.5.tgz
Old sources: SKAT archive

Reverse dependencies:

Reverse depends: FSTpackage, GenoScan, LGEWIS, LGRF, Mega2R, WGScan
Reverse imports: AllelicSeries, GBJ, MetaSKAT, SMUT, zfa
Reverse suggests: BGData, bigQF, FastKM, seqminer


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