adephylo: Exploratory Analyses for the Phylogenetic Comparative Method

Multivariate tools to analyze comparative data, i.e. a phylogeny and some traits measured for each taxa. The package contains functions to represent comparative data, compute phylogenetic proximities, perform multivariate analysis with phylogenetic constraints and test for the presence of phylogenetic autocorrelation. The package is described in Jombart et al (2010) <doi:10.1093/bioinformatics/btq292>.

Version: 1.1-16
Depends: methods, ade4 (≥ 1.7-10)
Imports: phylobase, ape, adegenet
Published: 2023-10-06
DOI: 10.32614/CRAN.package.adephylo
Author: Stéphane Dray ORCID iD [aut], Thibaut Jombart [aut], Anders Ellern Bilgrau [ctb], Aurélie Siberchicot ORCID iD [ctb, cre]
Maintainer: Aurélie Siberchicot <aurelie.siberchicot at>
License: GPL-2 | GPL-3 [expanded from: GPL (≥ 2)]
NeedsCompilation: yes
Citation: adephylo citation info
Materials: ChangeLog
In views: Phylogenetics
CRAN checks: adephylo results


Reference manual: adephylo.pdf
Vignettes: adephylo: exploratory analyses for the phylogenetic comparative method


Package source: adephylo_1.1-16.tar.gz
Windows binaries: r-devel:, r-release:, r-oldrel:
macOS binaries: r-release (arm64): adephylo_1.1-16.tgz, r-oldrel (arm64): adephylo_1.1-16.tgz, r-release (x86_64): adephylo_1.1-16.tgz, r-oldrel (x86_64): adephylo_1.1-16.tgz
Old sources: adephylo archive

Reverse dependencies:

Reverse imports: adespatial, phylosignal
Reverse suggests: ade4, phylosem, treestats


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