Differential analyses and Enrichment pipeline for bulk 'ATAC-seq' data
analyses. This package combines different packages to have an ultimate package
for both data analyses and visualization of 'ATAC-seq' data. Methods are described in
'Karakaslar et al.' (2021) <doi:10.1101/2021.03.05.434143>.
| Version: |
0.2.6 |
| Depends: |
R (≥ 4.0.0) |
| Imports: |
BiocManager, DESeq2, dplyr, edgeR, fgsea, GenomicRanges, ggplot2, ggrepel, grDevices, limma, methods, utils, pheatmap, preprocessCore, RColorBrewer, sva, writexl |
| Suggests: |
ChIPseeker, knitr, Matrix, Seurat, rmarkdown, markdown, TxDb.Hsapiens.UCSC.hg38.knownGene, TxDb.Hsapiens.UCSC.hg19.knownGene, TxDb.Mmusculus.UCSC.mm10.knownGene |
| Published: |
2026-02-04 |
| DOI: |
10.32614/CRAN.package.cinaR |
| Author: |
Onur Karakaslar 
[aut, cre],
Duygu Ucar [aut] |
| Maintainer: |
Onur Karakaslar <eonurkara at gmail.com> |
| BugReports: |
https://github.com/eonurk/cinaR/issues/ |
| License: |
GPL-3 |
| URL: |
https://github.com/eonurk/cinaR/, https://eonurk.github.io/cinaR/ |
| NeedsCompilation: |
no |
| Citation: |
cinaR citation info |
| Materials: |
README, NEWS |
| CRAN checks: |
cinaR results |