fitPoly: Genotype Calling for Bi-Allelic Marker Assays
Genotyping assays for bi-allelic markers (e.g. SNPs) produce
signal intensities for the two alleles. 'fitPoly' assigns genotypes
(allele dosages) to a collection of polyploid samples based on these
signal intensities. 'fitPoly' replaces the older package 'fitTetra' that was
limited (a.o.) to only tetraploid populations whereas 'fitPoly' accepts any
ploidy level. Reference: Voorrips RE, Gort G, Vosman B (2011)
<doi:10.1186/1471-2105-12-172>.
New functions added on conversion of data from SNP array software formats,
drawing of XY-scatterplots with or without genotype colors,
checking against expected F1 segregation patterns,
comparing results from two different assays (probes) for the same SNP,
recovery from a saveMarkerModels() crash.
| Version: |
4.0.0 |
| Depends: |
R (≥ 3.2.0) |
| Imports: |
foreach, devEMF, doParallel, grDevices |
| Suggests: |
knitr, rmarkdown |
| Published: |
2025-02-13 |
| Author: |
Roeland E. Voorrips [aut],
Gerrit Gort [aut],
Alejandro Therese Navarro [aut],
Giorgio Tumino [aut, cre] |
| Maintainer: |
Giorgio Tumino <giorgio.tumino at wur.nl> |
| License: |
GPL-2 |
| NeedsCompilation: |
no |
| Materials: |
README |
| CRAN checks: |
fitPoly results |
Documentation:
Downloads:
Reverse dependencies:
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