2020-01-14 Søren Højsgaard <sorenh@math.aau.dk> * Cleaning up experimental features * NAMESPACE file now generated automatically * Added testthat * Bug in propagateLS (cpp version) fixed * Version 1.3-3 uploaded 2016-10-15 Søren Højsgaard <sorenh@math.aau.dk> * Rewritten using roxygen * Version 1.3-0 uploaded 2015-12-30 Søren Højsgaard <sorenh@math.aau.dk> * plot(network, type="jt") now works again (same as plot(network, type="rip"), but the "jt" is mentioned in the GMwR-book, p 57). * Version 1.2-5 uploaded. 2015-06-28 Søren Højsgaard <sorenh@math.aau.dk> * many minor improvements * Version 1.2-4 uploaded. 2013-09-15 Søren Højsgaard <sorenh@math.aau.dk> * A note is printed if NA's appear in conditional probability tables. * Improved vignette * Version 1.2-2 uploaded. 2013-08-08 Søren Højsgaard <sorenh@math.aau.dk> * NAMESPACE file updated * Version 1.2-1 uploaded 2013-07-14 Søren Højsgaard <sorenh@math.aau.dk> * setEvidence function added. This function allows to insert likelihood evidence / virtual evidence in a network. The syntax may well change in the future. Corresponding functions retractEvidence, getEvidence, pEvidence have been added. * Vignette about the use of setEvidence has been added. * Components of a "CPTspec" (a list) now have node names as names. * Version 1.2-0 uploaded 2013-06-29 Søren Højsgaard <sorenh@math.aau.dk> * setEvidence function added. This function allows to insert likelihood evidence / virtual evidence in a network. The name of this function and its syntax may well change in the future. * loadHuginNet: bug fixed (related to potentials with exponential notation). * Version 1.1-2 uploaded 2013-05-28 Søren Højsgaard <sorenh@math.aau.dk> * simulateArray and glist2setMAT moved to gRbase * The use of fmatch from the fastmatch package has been removed because it can create trouble when a network is saved and reloaded. * Version 1.1-1 uploaded 2012-12-28 Søren Højsgaard <sorenh@math.aau.dk> * In moralization, triangulation and other places, graphs are now represented as sparse matrices (dgCMatrix from the Matrix package). This means that the package can now handle much larger networks than before. * Substantial speedup in propagation for large networks. * Function random_cpt added. Allows simulation of large networks. * Version 1.1-0 uploaded 2012-08-21 Søren Højsgaard <sorenh@math.aau.dk> * Bug fixed in setFindings * Version 1.0-3 uploaded 2012-08-04 Søren Højsgaard <sorenh@math.aau.dk> * Minimum version of gRbase stated. * Updates of e-mail address * Version 1.0-2 uploaded 2012-07-27 Søren Højsgaard <sorenh@math.aau.dk> * Minor changes needed to make gRain compatible with gRbase * Version 1.0-1 uploaded 2012-02-27 Søren Højsgaard <sorenh@math.aau.dk> * Following request from Achim Zeilis, the package version has been changed to 1.0-0 to signal that the JSS-paper has been published. * URLs updated * Version 1.0-0 uploaded 2012-02-21 Søren Højsgaard <sorenh@math.aau.dk> * Bug related to resetting network fixed * Version 0.8.14 uploaded 2012-02-17 Søren Højsgaard <sorenh@math.aau.dk> * Bug in setFinding fixed * Version 0.8.13 uploaded 2012-01-17 Søren Højsgaard <sorenh@math.aau.dk> * Small changes to package structure * Version 0.8.12 uploaded 2012-01-17 Søren Højsgaard <sorenh@math.aau.dk> * argument 'return' to querygrain is changed to 'result'. * URL updated * Version 0.8.11 uploaded 2011-12-30 Søren Højsgaard <sorenh@math.aau.dk> * Bug in simulate fixed. Thanks to Vanessa Didelez for pointing this bug out. * E-mail address changed * Version 0.8.10 uploaded 2011-09-07 Søren Højsgaard <sorenh@agrsci.dk> * A check for whether pFinding is zero added in predict method * Function repeatPattern has been added. * Version 0.8.9 uploaded 2011-07-20 Søren Højsgaard <sorenh@agrsci.dk> * Minor changes and fixes * Version 0.8.8 uploaded 2010-01-17 Søren Højsgaard <sorenh@agrsci.dk> * Version 0.8.7 uploaded 2010-08-13 Søren Højsgaard <sorenh@agrsci.dk> * extractCPT and extractPOT now also works on dataframes * An iplot method for grain objects has been added. * Version 0.8.6 uploaded 2010-05-07 Søren Højsgaard <sorenh@agrsci.dk> * Error in loadHuginNet has been fixed. Thanks to Parisa Niloofar for pointing this out. * cptable() now accepts formulae of the form a|b+c * The argument pa to cptable() has been deprecated (it was never used anyway!) * Version 0.8.5 uploaded 2010-02-11 Søren Højsgaard <sorenh@agrsci.dk> * compile and propagate functions have been made generic and moved to gRbase * Version 0.8.4 uploaded 2010-02-03 Søren Højsgaard <sorenh@agrsci.dk> * Bug fixed in predict.grain * Version 0.8.3 uploaded 2009-10-31 Søren Højsgaard <sorenh@agrsci.dk> * All 'trace' arguments have been changed to 'details' * Version 0.8.2 uploaded 2009-07-31 Søren Højsgaard <sorenh@agrsci.dk> * In previous versions: If the normalizing constant was zero then propagation was stopped. This has been changed so that propagation continues and the conditional probabilities are then NaN. * Version 0.8.1 uploaded 2009-04-26 Søren Højsgaard <sorenh@agrsci.dk> * Simplification of code. * Version 0.8.0 uploaded 2009-02-11 Søren Højsgaard <sorenh@agrsci.dk> * Bunch of minor changes, renamings etc. No new functionality. * Version 0.7.0 uploaded 2009-01-22 Søren Højsgaard <sorenh@agrsci.dk> * Various speed ups * Version 0.6.0 uploaded 2009-01-05 Søren Højsgaard <sorenh@agrsci.dk> * grain objects built from undirected graph and data now extended so that they also contain the slots dag and cptlist (so that they can be saved as a Hugin net file). * Version 0.5.3 uploaded. 2008-12-04 Søren Højsgaard <sorenh@agrsci.dk> * Small change on MCS call for consistency with current gRbase * Version 0.4.1 uploaded 2008-08-08 Søren Højsgaard <sorenh@agrsci.dk> * General table operation functions moved to gRbase * Version 0.4.0 uploaded 2008-07-13 Søren Højsgaard <sorenh@agrsci.dk> * Rgraphviz is no longer required, but if it is installed then plot() will produce graphs. * Version 0.3.4 uploaded 2008-06-12 Søren Højsgaard <sorenh@agrsci.dk> * Bug fix: ripOrder did not work on networks with only one clique in triangulated graph. * Version 0.3.3 uploaded 2008-05-07 Søren Højsgaard <sorenh@agrsci.dk> * Removal of functions which are in gRbase * Version 0.3.2 uploaded 2008-05-01 Søren Højsgaard <sorenh@agrsci.dk> * Coercion to ptab with as.ptab introduced. * Minor bugs corrected * Vignette added * Version 0.3.1 uploaded 2008-03-27 Søren Højsgaard <sorenh@agrsci.dk> * duplicated facilities (now moved to gRbase) are removed. * Debugging output in mcs removed * Major cleanup in graph code * Version 0.3.0 uploaded 2008-03-06 Søren Højsgaard <sorenh@agrsci.dk> * ctab objects changed to ptab objects (essentially arrays but modified such that dimension attributes are preserved). * Reimplemntation of table operations * A much faster implementation of simulate * Documents are updated * Various minor changes * Version 0.2.0 uploaded 2008-02-27 Søren Højsgaard <sorenh@agrsci.dk> * ctab slot-names have been modified * C code for graph triangulation incorporated; * Numerous small alterations * Various docs (pdfs) included * Version 0.1.2 uploaded 2008-01-30 Søren Højsgaard <sorenh@agrsci.dk> * simulate now works on uncompile objects * Version 0.1.1 of gRain uploaded to CRAN 2008-01-22 Søren Højsgaard <sorenh@agrsci.dk> * Version 0.1.0 of gRain uploaded to CRAN