## ----setup, include = FALSE--------------------------------------------------- knitr::opts_chunk$set( collapse = TRUE, comment = "#>", message = FALSE, warning = FALSE, dpi = 150, fig.align = "center", out.width = "80%" ) ## ----------------------------------------------------------------------------- library(ggcorrplot) ## ----------------------------------------------------------------------------- data(mtcars) corr <- round(cor(mtcars), 1) corr[1:5, 1:5] ## ----------------------------------------------------------------------------- p.mat <- cor_pmat(mtcars) p.mat[1:5, 1:5] ## ----basic, fig.show = "hold", out.width = "48%", fig.align = "default"------- ggcorrplot(corr) ggcorrplot(corr, method = "circle") ## ----circle-scale------------------------------------------------------------- ggcorrplot(corr, method = "circle", circle.scale = 0.6) ## ----hc----------------------------------------------------------------------- ggcorrplot(corr, hc.order = TRUE, outline.color = "white") ## ----hc-rect------------------------------------------------------------------ ggcorrplot(corr, hc.order = TRUE, hc.rect = 3, outline.color = "white") ## ----triangle, fig.show = "hold", out.width = "48%", fig.align = "default"---- ggcorrplot(corr, hc.order = TRUE, type = "lower", outline.color = "white") ggcorrplot(corr, hc.order = TRUE, type = "upper", outline.color = "white") ## ----mixed, fig.width = 6.5, fig.height = 6----------------------------------- ggcorrplot(corr, lower.method = "number", upper.method = "circle", cell.grid = TRUE, show.legend = FALSE ) ## ----lab, fig.width = 6, fig.height = 5.6------------------------------------- ggcorrplot(corr, hc.order = TRUE, type = "lower", lab = TRUE) ## ----lab-style, fig.width = 6, fig.height = 5.6------------------------------- ggcorrplot(cor(mtcars[, 1:6]), lab = TRUE, lab_size = 3.5, leading.zero = FALSE, nsmall = 2, type = "lower" ) ## ----insig-pch, fig.width = 6, fig.height = 5.6------------------------------- ggcorrplot(corr, hc.order = TRUE, type = "lower", p.mat = p.mat) ## ----insig-blank, fig.width = 6, fig.height = 5.6----------------------------- ggcorrplot(corr, hc.order = TRUE, type = "lower", p.mat = p.mat, insig = "blank") ## ----insig-stars, fig.width = 6, fig.height = 5.6----------------------------- ggcorrplot(corr, p.mat = p.mat, insig = "stars") ## ----sig-stars, fig.width = 6, fig.height = 5.6------------------------------- ggcorrplot(corr, type = "lower", p.mat = p.mat, lab = TRUE, insig = "stars" ) ## ----colors, fig.width = 6, fig.height = 5.6---------------------------------- ggcorrplot(corr, hc.order = TRUE, type = "lower", outline.color = "white", colors = c("#6D9EC1", "white", "#E46726") ) ## ----theme, fig.width = 6, fig.height = 5.6----------------------------------- ggcorrplot(corr, hc.order = TRUE, type = "lower", ggtheme = ggplot2::theme_minimal, tl.col = "gray30", tl.srt = 90, colors = c("#003C67", "white", "#8F2727") ) ## ----compose, fig.width = 6, fig.height = 5.8--------------------------------- library(ggplot2) ggcorrplot(corr, hc.order = TRUE, type = "lower", outline.color = "white") + labs( title = "Correlations among mtcars variables", caption = "Hierarchically clustered" ) + theme(plot.title = element_text(face = "bold")) ## ----save, eval = FALSE------------------------------------------------------- # p <- ggcorrplot(corr, hc.order = TRUE, lab = TRUE) # ggplot2::ggsave("correlogram.png", p, width = 7, height = 6, dpi = 300) ## ----pmat, eval = FALSE------------------------------------------------------- # cor_pmat(mtcars, method = "spearman") ## ----session------------------------------------------------------------------ sessionInfo()