iTOP: Inferring the Topology of Omics Data

Infers a topology of relationships between different datasets, such as multi-omics and phenotypic data recorded on the same samples. We based this methodology on the RV coefficient (Robert & Escoufier, 1976, <doi:10.2307/2347233>), a measure of matrix correlation, which we have extended for partial matrix correlations and binary data (Aben et al., 2018, <doi:10.1101/293993>).

Version: 1.0.2
Imports: Matrix, corpcor
Suggests: knitr, rmarkdown, NMF, pcalg, Rgraphviz
Published: 2018-06-13
DOI: 10.32614/CRAN.package.iTOP
Author: Nanne Aben
Maintainer: Nanne Aben <nanne.aben at>
License: GPL-2
NeedsCompilation: no
Materials: NEWS
CRAN checks: iTOP results


Reference manual: iTOP.pdf
Vignettes: A quick introduction to iTOP


Package source: iTOP_1.0.2.tar.gz
Windows binaries: r-devel:, r-release:, r-oldrel:
macOS binaries: r-release (arm64): iTOP_1.0.2.tgz, r-oldrel (arm64): iTOP_1.0.2.tgz, r-release (x86_64): iTOP_1.0.2.tgz, r-oldrel (x86_64): iTOP_1.0.2.tgz
Old sources: iTOP archive


Please use the canonical form to link to this page.