Quantitative trait loci (QTL) analysis and exploration of meiotic patterns in autopolyploid bi-parental F1 populations. For all ploidy levels, identity-by-descent (IBD) probabilities can be estimated. Significance thresholds, exploring QTL allele effects and visualising results are provided. For more background and to reference the package see <doi:10.1093/bioinformatics/btab574>.
| Version: | 0.1.1 |
| Depends: | R (≥ 3.5.0) |
| Imports: | abind, doParallel, foreach, grDevices, graphics, Hmisc, knitr, nlme, RColorBrewer, Rcpp (≥ 0.12.19), reshape2, stats, utils |
| LinkingTo: | Rcpp, RcppArmadillo |
| Suggests: | igraph, mappoly (≥ 0.3.0), polymapR, rmarkdown |
| Published: | 2024-01-09 |
| DOI: | 10.32614/CRAN.package.polyqtlR |
| Author: | Peter Bourke [aut, cre], Christine Hackett [ctb], Chris Maliepaard [ctb], Geert van Geest [ctb], Roeland Voorrips [ctb], Johan Willemsen [ctb] |
| Maintainer: | Peter Bourke <pbourkey at gmail.com> |
| License: | GPL-3 |
| NeedsCompilation: | yes |
| Citation: | polyqtlR citation info |
| In views: | Agriculture |
| CRAN checks: | polyqtlR results |
| Reference manual: | polyqtlR.pdf |
| Vignettes: |
How to use polyqtlR |
| Package source: | polyqtlR_0.1.1.tar.gz |
| Windows binaries: | r-devel: polyqtlR_0.1.1.zip, r-release: polyqtlR_0.1.1.zip, r-oldrel: polyqtlR_0.1.1.zip |
| macOS binaries: | r-devel (arm64): polyqtlR_0.1.1.tgz, r-release (arm64): polyqtlR_0.1.1.tgz, r-oldrel (arm64): polyqtlR_0.1.1.tgz, r-devel (x86_64): polyqtlR_0.1.1.tgz, r-release (x86_64): polyqtlR_0.1.1.tgz, r-oldrel (x86_64): polyqtlR_0.1.1.tgz |
| Old sources: | polyqtlR archive |
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