sequoia: Pedigree Inference from SNPs

Multi-generational pedigree inference from incomplete data on hundreds of SNPs, including parentage assignment and sibship clustering. See Huisman (2017) (<doi:10.1111/1755-0998.12665>) for more information.

Version: 2.11.2
Depends: R (≥ 3.5.0)
Imports: plyr (≥ 1.8.0), stats, utils, graphics, cli
Suggests: openxlsx, knitr, rmarkdown, bookdown, kinship2, R.rsp, hexbin, data.table, vcfR, adegenet
Published: 2024-05-28
DOI: 10.32614/CRAN.package.sequoia
Author: Jisca Huisman [aut, cre]
Maintainer: Jisca Huisman <jisca.huisman at>
License: GPL-2
NeedsCompilation: yes
SystemRequirements: Fortran95
Citation: sequoia citation info
Materials: NEWS
CRAN checks: sequoia results


Reference manual: sequoia.pdf
Vignettes: PedCompare Example (Griffin Pedigree)
Quick start example 1: Simulated data
Sequoia - Age 'Prior'
Sequoia User Guide
Sequoia flowchart
Mitochondrial haplotypes


Package source: sequoia_2.11.2.tar.gz
Windows binaries: r-devel:, r-release:, r-oldrel:
macOS binaries: r-release (arm64): sequoia_2.11.2.tgz, r-oldrel (arm64): sequoia_2.11.2.tgz, r-release (x86_64): sequoia_2.11.2.tgz, r-oldrel (x86_64): sequoia_2.11.2.tgz
Old sources: sequoia archive


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