ubms: Bayesian Models for Data from Unmarked Animals using 'Stan'

Fit Bayesian hierarchical models of animal abundance and occurrence via the 'rstan' package, the R interface to the 'Stan' C++ library. Supported models include single-season occupancy, dynamic occupancy, and N-mixture abundance models. Covariates on model parameters are specified using a formula-based interface similar to package 'unmarked', while also allowing for estimation of random slope and intercept terms. References: Carpenter et al. (2017) <doi:10.18637/jss.v076.i01>; Fiske and Chandler (2011) <doi:10.18637/jss.v043.i10>.

Version: 1.2.6
Depends: R (≥ 3.4.0), unmarked
Imports: ggplot2 (≥ 2.0.0), gridExtra, lme4, loo, Matrix (≥ 1.5-0), methods, pbapply, Rcpp (≥ 0.12.0), rlang, RSpectra, rstan (≥ 2.26.0), rstantools (≥ 2.0.0), stats
LinkingTo: BH (≥ 1.66.0), Rcpp (≥ 0.12.0), RcppArmadillo (≥ 0.9.300.2.0), RcppEigen (≥, rstan (≥ 2.26.0), StanHeaders (≥ 2.26.0), RcppParallel (≥ 5.0.2)
Suggests: covr, devtools, knitr, pkgdown, raster, rmarkdown, roxygen2, testthat
Published: 2023-09-11
DOI: 10.32614/CRAN.package.ubms
Author: Ken Kellner [cre, aut]
Maintainer: Ken Kellner <contact at kenkellner.com>
BugReports: https://github.com/kenkellner/ubms/issues
License: GPL (≥ 3)
URL: https://kenkellner.com/ubms/
NeedsCompilation: yes
SystemRequirements: GNU make
Citation: ubms citation info
Materials: NEWS
CRAN checks: ubms results


Reference manual: ubms.pdf
Vignettes: Comparing models fit in ubms and JAGS
Random effects in ubms
Spatial Models in ubms
Overview of ubms


Package source: ubms_1.2.6.tar.gz
Windows binaries: r-devel: ubms_1.2.6.zip, r-release: ubms_1.2.6.zip, r-oldrel: ubms_1.2.6.zip
macOS binaries: r-release (arm64): ubms_1.2.6.tgz, r-oldrel (arm64): ubms_1.2.6.tgz, r-release (x86_64): ubms_1.2.6.tgz, r-oldrel (x86_64): ubms_1.2.6.tgz
Old sources: ubms archive


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